RnoEX6016447 @ rn6
Exon Skipping
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11402020-11404670:+
Coord C1 exon
chr3:11402020-11402217
Coord A exon
chr3:11403565-11403689
Coord C2 exon
chr3:11404583-11404670
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTGGTACATTCATGCTACAGGAG
3' ss Score
4.91
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATGTGGGGGGCTGGGAGCTCCCTGAAGGTCACCATCCTGCAGAGTAGCAACAGCCGGGCTTTCAACACCACACCCCTCACATCTGGACCTCGCCCTGGGGACTCCGCCTCTGCCACCCCTGCCCTTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCAGCAGCCAGCAG
Seq A exon
GAGTTTCAGGATCACATGTCAGAGGCTCAGCACCAACAGCGGCTTGGGGAAATGCAGCACTCGAGCCAGACCTGCCTGTTGTCCCTGCTGCCCATGCCTCGGGACATCCTGGAGAGAGAAACAGA
Seq C2 exon
AGATCCTCCACCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACATGGGAGACCTGATCCAGCACCGCAGGACACAGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-'16-25,'16-23,17-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=0.500 C2=0.156
Domain overlap (PFAM):
C1:
PF127562=zf-C2H2_2=PU(50.0=40.9)
A:
PF127562=zf-C2H2_2=PD(46.3=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGAAGGTCACCATCCT
R:
TGCTGGATCAGGTCTCCCATG
Band lengths:
247-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]