MmuEX6100544 @ mm9
Exon Skipping
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32227818-32231092:+
Coord C1 exon
chr2:32227818-32228015
Coord A exon
chr2:32229862-32229986
Coord C2 exon
chr2:32231005-32231092
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGGTGCATTCCTGCTGCAGGAG
3' ss Score
7.82
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
ATGTGGGGGGCTGGGAGCTCCCTGAAGGTCACCATCCTGCAGAGTAGCAACAGCCGGGCCTTTAACACCACACCCCTCACATCTGGACCTCGCCCTGGGGACTCTACCTCTGCCACCCCTGCCATTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCAGCAGCAGCCAGCAG
Seq A exon
GAGTTCCAGGATCACATGTCAGAGGCTCAGCACCAACAGCGGCTTGGGGAAATACAACACTCGAGCCAGACCTGCCTGCTGTCCCTGCTGCCCATGCCTCGGGACATCCTGGAGAAAGAAGCGGA
Seq C2 exon
AGATCCTCCGCCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACGTGGGAGACTTGATCCAGCACCGTAGGACACAGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-'26-34,'26-30,27-34=AN
Average complexity
A_S
Mappability confidence:
91%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.502 A=0.542 C2=0.128
Domain overlap (PFAM):
C1:
PF127562=zf-C2H2_2=PU(50.0=39.4),PF049887=AKAP95=PU(23.2=19.7)
A:
PF127562=zf-C2H2_2=PD(46.2=57.1),PF049887=AKAP95=PD(71.7=90.5)
C2:
PF049887=AKAP95=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGAAGGTCACCATCCT
R:
TCCTACGGTGCTGGATCAAGT
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: