DreEX6014630 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68197371-68201185:-
Coord C1 exon
chr5:68200981-68201185
Coord A exon
chr5:68199348-68199444
Coord C2 exon
chr5:68197371-68197599
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATTACGCTGTACTTTTATAGGTG
3' ss Score
8.1
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCCCAGCCGGTGCCTGATGAGCTGGTGGCCAAGCTTTTGGGGAACCAGGCCACGTTCAGTCCTGTGGTGACGGTGGAGCCTCGGCGCCGGAAGTTTCACCGTCCCATCGGCCTAAGAATCCCACTGCCACCCTCATGGAGAGAGAGCCCGCGGGACGCCGGAGAGGGAGACACCACCAGCCTGCGCCTGCTCTGCAGCGTCATCG
Seq A exon
GTGGAACAGCTCCTGCCCAGTGGGAAGATATAACTGGCACCACCAAACTGGCGTATTCCAATGACTGTGCCAGTTTCACCACCAACGTCTCTGCCCG
Seq C2 exon
ATTCTGGCTGGCGGACTGTCCTCGGACTGCGGAGGCCGTGTCCTTTGCCAACCTCCTGTACCGCGAGCTGTCGGCCGTGCCGTACATGGCCAAGTTTGTAGTGTTTGCGAAGATGAATGAAGCTCGCGAGGGTCGACTCCGCTGCTACTGCATGACGGATGACAAGATGGACAAAACCCTGGAGCAGCACGAGAACTTCTCGGAAGTGGCTCGCAGCAGAGACATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-'34-39,'34-38,35-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTTCACCGTCCCATCG
R:
GGTACAGGAGGTTGGCAAAGG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]