RnoEX6055947 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73768597-73769574:-
Coord C1 exon
chr16:73769370-73769574
Coord A exon
chr16:73768984-73769080
Coord C2 exon
chr16:73768597-73768825
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGCTGGCGTTGCAGGTG
3' ss Score
8.32
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCCAGCCTGTCCCAGACGAGCTGGTGACCAAGCTCCTGGGCAACCAGGCCACCTTCAGCCCCATTGTTACTGTTGAGCCAAGGCGTCGGAAGTTCCACCGTCCCATTGGGCTGCGAATCCCACTCCCTCCCTCATGGACTGACAACCCCAGGGACAGCGGGGAGGGAGACACCACCAGCCTACGCTTACTGTGCAGCGTCATCG
Seq A exon
GTGGAACTGACCAAGCCCAGTGGGAAGATATAACGGGAACAACCAAGCTTGTATACGCCAATGAGTGCGCCAACTTTACCACCAACGTCTCAGCCAG
Seq C2 exon
ATTCTGGCTGTCGGACTGTCCTCGGACCGCTGAGGCCGTACACTTTGCCACTCTCTTGTACAAAGAGCTCACGGCAGTTCCCTACATGGCCAAGTTTGTCATTTTCGCCAAGATGAACGACCCCCGGGAAGGACGGCTACGCTGCTACTGCATGACAGATGACAAGGTGGACAAGACCCTGGAACAGCATGAAAACTTCGTGGAGGTGGCCCGGAGCAGGGACATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'42-42,'42-41,43-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCACTCCCTCCCTCATG
R:
GAACTGCCGTGAGCTCTTTGT
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]