HsaEX6080544 @ hg19
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41550166-41551620:-
Coord C1 exon
chr8:41551416-41551620
Coord A exon
chr8:41550623-41550719
Coord C2 exon
chr8:41550166-41550394
Length
97 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGCCGCTGTTACAGGAG
3' ss Score
6.88
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCCAGCCTGTCCCGGATGAGCTTGTCACTAAGCTCCTGGGCAACCAGGCCACATTCAGCCCCATTGTCACCGTGGAGCCCCGGCGCCGGAAGTTCCACCGCCCCATTGGGCTTCGGATCCCACTACCTCCTTCCTGGACCGACAACCCGAGGGACAGCGGGGAGGGAGACACCACCAGCCTGCGCCTGCTTTGCAGCGTCATTG
Seq A exon
GAGGAACAGACCAAGCCCAGTGGGAAGACATAACAGGAACCACCAAACTTGTATATGCCAACGAGTGCGCCAACTTCACCACCAATGTCTCTGCCAG
Seq C2 exon
GTTTTGGCTGTCGGACTGTCCTCGGACTGCTGAGGCTGTGAACTTTGCCACCCTGCTGTACAAAGAGCTCACTGCAGTGCCCTACATGGCCAAATTCGTCATCTTTGCCAAGATGAATGACCCCCGAGAGGGGCGCCTGCGCTGCTACTGCATGACAGATGATAAAGTGGACAAGACCCTGGAGCAGCATGAGAACTTCGTGGAGGTGGCCCGGAGCAGGGACATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCAGCCCCATTGTCACC
R:
GGACAGTCCGACAGCCAAAAC
Band lengths:
175-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)