GgaEX0004698 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2620671-2621497:-
Coord C1 exon
chr22:2621293-2621497
Coord A exon
chr22:2621044-2621140
Coord C2 exon
chr22:2620671-2620899
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTCTCCTGCTGCAGGAG
3' ss Score
9.93
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCGCAGCCCGTGCCTGATGAGCTGGTGACCAAGCTGCTGGGGAACCAGGCAACCTTCAGCCCCATCGTCACAGTGGAGCCACGTCGGAGGAAGTTCCACCGCCCCATTGGCCTCCGCATCCCTCTGCCCCCATCCTGGAAGGACAATCCCCGGGACAGCGGCGAGGGTGACACCACCAGCCTGCGCCTGCTCTGTTCTGTGATAG
Seq A exon
GAGGGACAGCACAAGCTCAGTGGGAAGACATCACAGGCACCACAAAGCTGGTCTATGAAAAAGAGTGTGCTAACTTTACCACCAATGTGTCTGCCAG
Seq C2 exon
GTTCTGGCTGGCTGACTGCCCGCGCACTGCTGAGGCTGTGCACTTTGCCACCGTGCTGTACAAGGAACTGACGGCTGTGCCCTACATGGCCAAATTTGTGGTGTTTGCTAAGATGAACGATGGACGGGAAGGCCGGCTGCGCTGCTACTGCATGACTGATGACAAGGTGGACAAGACTTTGGAGCATCATGAGAACTTCACTGAGGTGGCCCGCAGCAGGGACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX2-10/14=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTCCACCGCCCCATTG
R:
TTGTACAGCACGGTGGCAAAG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]