GgaEX0004698 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2670940-2671766:-
Coord C1 exon
chr22:2671562-2671766
Coord A exon
chr22:2671313-2671409
Coord C2 exon
chr22:2670940-2671168
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTCTCCTGCTGCAGGAG
3' ss Score
9.93
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCGCAGCCCGTGCCTGATGAGCTGGTGACCAAGCTGCTGGGGAACCAGGCAACCTTCAGCCCCATCGTCACAGTGGAGCCACGTCGGAGGAAGTTCCACCGCCCCATTGGCCTCCGCATCCCTCTGCCCCCATCCTGGAAGGACAATCCCCGGGACAGCGGCGAGGGTGACACCACCAGCCTGCGCCTGCTCTGTTCTGTGATAG
Seq A exon
GAGGGACAGCACAAGCTCAGTGGGAAGACATCACAGGCACCACAAAGCTGGTCTATGAAAAAGAGTGTGCTAACTTTACCACCAATGTGTCTGCCAG
Seq C2 exon
GTTCTGGCTGGCTGACTGCCCGCGCACTGCTGAGGCTGTGCACTTTGCCACCGTGCTGTACAAGGAACTGACGGCTGTGCCCTACATGGCCAAATTTGTGGTGTTTGCTAAGATGAACGATGGACGGGAAGGCCGGCTGCGCTGCTACTGCATGACTGATGACAAGGTGGACAAGACTTTGGAGCATCATGAGAACTTCACTGAGGTGGCCCGCAGCAGGGACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'33-33,'33-31,35-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTCCACCGCCCCATTG
R:
TTGTACAGCACGGTGGCAAAG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]