DreEX6014632 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68191884-68197599:-
Coord C1 exon
chr5:68197371-68197599
Coord A exon
chr5:68192857-68192985
Coord C2 exon
chr5:68191884-68192003
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTCTGTAGGTG
3' ss Score
11.72
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTCTGGCTGGCGGACTGTCCTCGGACTGCGGAGGCCGTGTCCTTTGCCAACCTCCTGTACCGCGAGCTGTCGGCCGTGCCGTACATGGCCAAGTTTGTAGTGTTTGCGAAGATGAATGAAGCTCGCGAGGGTCGACTCCGCTGCTACTGCATGACGGATGACAAGATGGACAAAACCCTGGAGCAGCACGAGAACTTCTCGGAAGTGGCTCGCAGCAGAGACATCGAG
Seq A exon
GTGATGGAGGGAATGCCGCTGTATTTGGAGTGTTCAGGAAACTTGGTTCCTATAAGAAAAGCAGCCCAGCAGCCTCGCTGTTTCAGCTTCCAGGCCTTTAAAGACAACAGACTGCCTGTGTCCGTCAAG
Seq C2 exon
GTGAGGGACAGCAGTAAAGACCCCTCTGGGTTTTTGTCTTTCTTGCGCAAGTCAACCAAATATGAAGACAGCCAACACGTGCTGTGCAACCTCAACGTGACCATGCCGCCGTGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-'36-41,'36-40,38-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGTTTGTAGTGTTTGCG
R:
CATGGTCACGTTGAGGTTGCA
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]