GgaEX1065911 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2670531-2671168:-
Coord C1 exon
chr22:2670940-2671168
Coord A exon
chr22:2670731-2670856
Coord C2 exon
chr22:2670531-2670650
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCGTGCTCCACTCCCTGCAGGTG
3' ss Score
10.84
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTCTGGCTGGCTGACTGCCCGCGCACTGCTGAGGCTGTGCACTTTGCCACCGTGCTGTACAAGGAACTGACGGCTGTGCCCTACATGGCCAAATTTGTGGTGTTTGCTAAGATGAACGATGGACGGGAAGGCCGGCTGCGCTGCTACTGCATGACTGATGACAAGGTGGACAAGACTTTGGAGCATCATGAGAACTTCACTGAGGTGGCCCGCAGCAGGGACATTGAG
Seq A exon
GTGGTGGAAGGAATGCCTCTGCATGTCGAGCTCTCAGGGAACCTGGTGCCCGTCAAGAAGGCCACGCAGTCACGCACCTTCTTCTTCCAGTCCTTCCGGGAAAGCCGCCTCGCCATCCCCATCAAG
Seq C2 exon
GTCCGGGACAGCAGCCGGGAAGCCAGTGGCTCCCTGTCCTTCCTGCGCAAGGCCATGAAGTATGAGGACTTGCAGCATGTGCTCTGCCACCTCAACATCAGCATTCCACCCTGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'37-35,'37-34,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCACCGTGCTGTACAAG
R:
TCATACTTCATGGCCTTGCGC
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]