RnoEX6055949 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73766844-73768825:-
Coord C1 exon
chr16:73768597-73768825
Coord A exon
chr16:73767095-73767220
Coord C2 exon
chr16:73766844-73766963
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACGCTTTTCTCTTCCCTCAGGTT
3' ss Score
11.45
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
ATTCTGGCTGTCGGACTGTCCTCGGACCGCTGAGGCCGTACACTTTGCCACTCTCTTGTACAAAGAGCTCACGGCAGTTCCCTACATGGCCAAGTTTGTCATTTTCGCCAAGATGAACGACCCCCGGGAAGGACGGCTACGCTGCTACTGCATGACAGATGACAAGGTGGACAAGACCCTGGAACAGCATGAAAACTTCGTGGAGGTGGCCCGGAGCAGGGACATAGAG
Seq A exon
GTTCTAGAAGGGATGCCTCTGTTTGCAGAACTCTCTGGGAACTTGGTGCCTGTCAAGAAAGCGGCCCAGCAGCGAAGCTTCCATTTCCAGTCATTTCGAGAGAATCGCCTGGCCATCCCCGTGAAG
Seq C2 exon
GTGAGGGACAGCAGCCGCGAGCCAGGAGGGTTCTTGTCGTTCCTGCGGAAGCCGATGAAATATGAAGACGCACAGCACATCCTCTGCCACTTGAATGTCACCATGCCCCCCTGTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGGCAGTTCCCTACATG
R:
TTCAAGTGGCAGAGGATGTGC
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]