MmuEX6034888 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23116837-23119433:+
Coord C1 exon
chr8:23116837-23117065
Coord A exon
chr8:23119062-23119187
Coord C2 exon
chr8:23119314-23119433
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTCCCCCCCTATAGGTT
3' ss Score
11.86
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GTTCTGGCTGTCAGACTGTCCCCGGACTGCGGAGGCTGTGCACTTTGCCACTCTCCTGTACAAAGAGCTCACAGCAGTCCCCTACATGGCTAAGTTTGTCATTTTTGCCAAGATGAACGACGCTCGGGAAGGACGGCTCCGTTGCTACTGCATGACGGATGACAAAGTGGACAAGACCCTGGAGCAGCATGAAAACTTCGTGGAGGTGGCCCGGAGCAGGGACATAGAG
Seq A exon
GTTCTGGAAGGGATGCCTCTGTTTGCAGAACTCTCTGGGAACTTGGTTCCTGTCAAGAAAGCGGCCCAACAGCGGAGCTTCCATTTCCAGTCGTTTCGAGAGAATCGTCTGGCCATCCCCGTGAAG
Seq C2 exon
GTGAGGGACAGCAGCCGCGAGCCAGGAGGGTTCTTGTCGTTCCTACGAAAGACAATGAAGTACGAGGACACACAGCACATCCTCTGTCACCTGAATATCACCATGCCCCCCTGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'37-62,'37-54,42-62=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTCCCCTACATGGCTA
R:
CAGAGGATGTGCTGTGTGTCC
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types