GgaEX1065911 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2619757-2620899:-
Coord C1 exon
chr22:2620671-2620899
Coord A exon
chr22:2620462-2620587
Coord C2 exon
chr22:2619757-2619831
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCGTGCTCCACTCCCTGCAGGTG
3' ss Score
10.84
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTCTGGCTGGCTGACTGCCCGCGCACTGCTGAGGCTGTGCACTTTGCCACCGTGCTGTACAAGGAACTGACGGCTGTGCCCTACATGGCCAAATTTGTGGTGTTTGCTAAGATGAACGATGGACGGGAAGGCCGGCTGCGCTGCTACTGCATGACTGATGACAAGGTGGACAAGACTTTGGAGCATCATGAGAACTTCACTGAGGTGGCCCGCAGCAGGGACATTGAG
Seq A exon
GTGGTGGAAGGAATGCCTCTGCATGTCGAGCTCTCAGGGAACCTGGTGCCCGTCAAGAAGGCCACGCAGTCACGCACCTTCTTCTTCCAGTCCTTCCGGGAAAGCCGCCTCGCCATCCCCATCAAG
Seq C2 exon
GCTCTCTGAGCAGCACCGACAGGGCAGACCAGAAGATGATCGACATTGCAGAGCAGCTTGGCCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX2-12/14=11-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053117=Death=PU(19.0=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCACCGTGCTGTACAAG
R:
AGCTGCTCTGCAATGTCGATC
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]