DreEX6015705 @ danRer10
Exon Skipping
Gene
ENSDARG00000002167 | cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
Coordinates
chr3:16021731-16022313:-
Coord C1 exon
chr3:16022233-16022313
Coord A exon
chr3:16022021-16022079
Coord C2 exon
chr3:16021731-16021840
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTGCAGGTC
3' ss Score
12.6
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGGAACATGTTCCTCCTTACGATGTGGTGCCTTCCATGAGACCCATTATTTTAGTGGGGCCGTCCCTTAAAGGCTATGAG
Seq A exon
GTCACAGATATGATGCAGAAAGCTCTCTTCGACTTTCTAAAACACAAATTTGAGGGCAG
Seq C2 exon
AATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002167-'11-15,'11-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.2=55.6)
A:
PF0062516=Guanylate_kin=FE(10.3=100)
C2:
PF0062516=Guanylate_kin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACGATGTGGTGCCTTCC
R:
ATGATGGTGTGTTTGCTGGGG
Band lengths:
147-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]