MmuEX0008832 @ mm10
Exon Skipping
Gene
ENSMUSG00000020882 | Cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:MGI Symbol;Acc:MGI:102522]
Coordinates
chr11:98009569-98010376:-
Coord C1 exon
chr11:98010296-98010376
Coord A exon
chr11:98009858-98009916
Coord C2 exon
chr11:98009569-98009678
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTCTAACCCCTGCGTGACAGGTG
3' ss Score
6.15
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCGTCGCTCAAGGGCTATGAG
Seq A exon
GTGACAGACATGATGCAGAAAGCGTTGTTTGACTTCCTCAAGCATCGGTTTGATGGCAG
Seq C2 exon
GATTTCCATCACCCGGGTAACAGCTGACATTTCCCTGGCCAAACGCTCCGTCCTCAACAACCCCAGCAAACACATCATCATTGAGCGCTCCAACACGCGTTCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020882-'25-20,'25-19,27-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
ENSMUST00000017552fB6906
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATGAGGCCCATCATCCT
R:
CGTGTTGGAGCGCTCAATGAT
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types