BtaEX6088281 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40305138-40306030:+
Coord C1 exon
chr19:40305138-40305218
Coord A exon
chr19:40305678-40305736
Coord C2 exon
chr19:40305921-40306030
Length
59 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTGCCCCAACTTCAGGTT
3' ss Score
8.72
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACAGAACACGTGCCCCCTTATGACGTGGTACCTTCCATGAGGCCCATTATCCTGGTGGGACCGTCGCTGAAGGGCTATGAG
Seq A exon
GTTACAGATATGATGCAGAAAGCTTTATTTGACTTCTTGAAGCATCGGTTTGATGGCAG
Seq C2 exon
GATCTCCATCACACGTGTGACAGCGGACATTTCCCTGGCTAAGCGATCAGTCCTCAACAACCCCAGCAAACACATCATCATCGAGCGTTCCAACACACGCTCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTTATGACGTGGTACCT
R:
TTTGCTGGGGTTGTTGAGGAC
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]