RnoEX0016168 @ rn6
Exon Skipping
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85962403-85963215:-
Coord C1 exon
chr10:85963135-85963215
Coord A exon
chr10:85962702-85962760
Coord C2 exon
chr10:85962403-85962512
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTCTAACCCCTGCTTGACAGGTA
3' ss Score
6.6
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCATCGCTCAAGGGCTATGAG
Seq A exon
GTAACTGACATGATGCAGAAGGCGTTGTTTGACTTCTTGAAGCATCGGTTTGATGGCAG
Seq C2 exon
GATTTCCATCACCCGGGTAACGGCTGACATTTCCCTGGCCAAGCGCTCGGTCCTCAACAACCCCAGCAAACACATTATCATCGAGCGCTCCAACACTCGCTCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518-'23-12,'23-10,24-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATGAGGCCCATCATCCT
R:
GTGTTGGAGCGCTCGATGATA
Band lengths:
145-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]