DreEX6016111 @ danRer10
Exon Skipping
Gene
ENSDARG00000078135 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr3:19626527-19630467:+
Coord C1 exon
chr3:19626527-19626718
Coord A exon
chr3:19627442-19627596
Coord C2 exon
chr3:19630363-19630467
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCTGTGTGTCTTAGATA
3' ss Score
10.16
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ACTCGTGGGCAGATGATGGCCATTACCAGTGTGACGTGGGCTGGCAGAACTTCCAGACGGGCTGCTATTGGCTGAACTCAGACAAACTGGACTGGAGATCAGCTGACAGAACATGTCAGAAGATGGAGGCTAATCTTGTTAGCATACACACCCTGCCAGAGCTCGAGTACATCACGAAACATATGAAGAAAG
Seq A exon
ATATAGAAGAGTTGTGGATTGGTCTTCATGATACAGCAATGCAGATGAACTTTGAATGGACGGATCGCACTCCAGTCATCTTCACTTACTGGCACCCGTTTGAACCCAACAATTTTCGAGAGGTTAATGAGGACTGTGTCACCATCTGGGGCCCT
Seq C2 exon
GAGGGCCGCTGGAACGATAGCCCATGTAATTACTCTCTGCCCTCCATCTGTAAGAAACCGGCCCAGAAAGCTGACGACCGGATACAAGACCACGGCTGCAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078135-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(34.3=56.9)
A:
PF0005916=Lectin_C=FE(47.2=100)
C2:
PF0005916=Lectin_C=PD(16.7=51.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGACGGGCTGCTATTG
R:
TTGCAGCCGTGGTCTTGTATC
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]