GgaEX1036945 @ galGal4
Exon Skipping
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2416033-2417207:+
Coord C1 exon
chr27:2416033-2416221
Coord A exon
chr27:2416704-2416858
Coord C2 exon
chr27:2417100-2417207
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGAGCCTCCTGTTTTGGCAGACG
3' ss Score
6.21
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ATTCGTGGTCAGAGGTGAAAGTGGACTGTGAGCCCAGCTGGCAGTCCTTCCAATCCAACTGCTATCGCCTGGTGGGAGAGAAGAAGAGTTGGCAGGATGCAAAGAAGACCTGCCTGAGGAGTGGAGGGGACCTGGTCAGCATCCACACGCTCTCCGAGCTGGAGTTTGTTACCAAGCAGGTCAAACAAG
Seq A exon
ACGTGGAAGAGCTCTGGATTGGTCTAAATGATCTCAAGCTGCAGATGAACTTCGAGTGGTCAGACGGGACACCTGTGAGGTTCACCTATTGGCACCCCTTTGAGCCCAACAATTTCCGTGACAGCCTGGAGGACTGCGTCACCATCTGGGGACCG
Seq C2 exon
GAAGGGAGATGGAATGACAGCCCGTGCAACCAGAGCCTGCCCTCCATCTGCAAAAAGCCTGGCCGGGTGAGCCAGGAGAAAGAGGAAGATGACCACGGGTGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461-'5-8,'5-6,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(34.3=57.8)
A:
PF0005916=Lectin_C=FE(47.2=100)
C2:
PF0005916=Lectin_C=PD(16.7=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTCAGAGGTGAAAGTGG
R:
AGGCTTTTTGCAGATGGAGGG
Band lengths:
246-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]