HsaEX0040059 @ hg38
Exon Skipping
Gene
ENSG00000011028 | MRC2
Description
mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr17:62671649-62674170:+
Coord C1 exon
chr17:62671649-62671837
Coord A exon
chr17:62671998-62672152
Coord C2 exon
chr17:62674063-62674170
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGCTGCACCCCCAGAGG
3' ss Score
7.52
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ACAGGTGGGCCAATGTGAAGGTGGAGTGCGAGCCGAGCTGGCAGCCCTTCCAGGGCCACTGCTACCGCCTGCAGGCCGAGAAGCGCAGCTGGCAGGAGTCCAAGAAGGCATGTCTACGGGGCGGTGGCGACCTGGTCAGCATCCACAGCATGGCGGAGCTGGAATTCATCACCAAGCAGATCAAGCAAG
Seq A exon
AGGTGGAGGAGCTGTGGATCGGCCTCAACGATTTGAAACTGCAGATGAATTTTGAGTGGTCTGACGGGAGCCTTGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTCCGGGACAGTCTGGAGGACTGTGTCACCATCTGGGGCCCG
Seq C2 exon
GAAGGCCGCTGGAACGACAGTCCCTGTAACCAGTCCTTGCCATCCATCTGCAAGAAGGCAGGCCAGCTGAGCCAGGGGGCCGCCGAGGAGGACCATGGCTGCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011028_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(34.3=57.8)
A:
PF0005916=Lectin_C=FE(47.2=100)
C2:
PF0005916=Lectin_C=PD(16.7=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAATGTGAAGGTGGAGTG
R:
TGCCTTCTTGCAGATGGATGG
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development