MmuEX0029622 @ mm10
Exon Skipping
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105331884-105333731:+
Coord C1 exon
chr11:105331884-105332072
Coord A exon
chr11:105332236-105332390
Coord C2 exon
chr11:105333624-105333731
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTCCTGTACTCCAGAGG
3' ss Score
7.65
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ACCGGTGGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAGCCCTTCCAGGGCCACTGCTACCGCCTGCAGGCCGAGAAGCGCAGCTGGCAGGAGTCCAAGAGGGCGTGTCTGCGGGGTGGGGGTGACCTCCTTAGCATCCACAGCATGGCTGAGCTGGAGTTCATCACCAAACAGATCAAGCAAG
Seq A exon
AGGTGGAGGAGCTATGGATTGGCCTCAATGATTTGAAACTGCAGATGAATTTTGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCTGGAGGACTGTGTCACCATCTGGGGGCCG
Seq C2 exon
GAAGGACGCTGGAACGACAGTCCCTGTAACCAGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAGGGCGCTGCGGAGGAGGACCACGGCTGCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-'14-14,'14-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(34.3=57.8)
A:
PF0005916=Lectin_C=FE(47.2=100)
C2:
PF0005916=Lectin_C=PD(16.7=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACCAATGTCAAGGTGG
R:
GCCTTCTTGCAAATGGATGGC
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types