RnoEX0055562 @ rn6
Exon Skipping
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93562262-93564054:+
Coord C1 exon
chr10:93562262-93562450
Coord A exon
chr10:93562554-93562708
Coord C2 exon
chr10:93563947-93564054
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCCTCCTTCCCCAGAGG
3' ss Score
11.01
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ACAGGTGGGCCAATGTCAAGGTGGAGTGTGACCCCAGCTGGCAGCCCTTCCAGGGCCACTGCTACCGCCTGCAGGCGGAGAAGCGCAGCTGGCAGGAGTCCAAGAGGGCGTGCCTACGGGGCGGGGGCGACCTCCTTAGCATCCACAGCATGACTGAGCTGGAGTTCATCACCAAACAGATCAAGCAAG
Seq A exon
AGGTGGAAGAGCTATGGATTGGCCTCAATGATTTGAAGCTGCAGATGAATTTTGAGTGGTCTGATGGGAGCCTCGTGAGTTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTCCGTGACAGCCTGGAAGACTGTGTCACCATCTGGGGGCCG
Seq C2 exon
GAAGGACGCTGGAATGACAGTCCCTGTAACCAATCCTTGCCCTCCATCTGCAAGAAGGCAGGCCGACTGAGCCAGGGCACTGCAGAGGAGGACCATGGCTGCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548-'9-11,'9-9,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(34.3=57.8)
A:
PF0005916=Lectin_C=FE(47.2=100)
C2:
PF0005916=Lectin_C=PD(16.7=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGGCCAATGTCAAGG
R:
CTTCTTGCAGATGGAGGGCAA
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]