DreEX6018958 @ danRer10
Exon Skipping
Gene
ENSDARG00000077249 | gmip
Description
GEM interacting protein [Source:ZFIN;Acc:ZDB-GENE-130530-823]
Coordinates
chr3:52518109-52520786:+
Coord C1 exon
chr3:52518109-52518216
Coord A exon
chr3:52518303-52518383
Coord C2 exon
chr3:52520625-52520786
Length
81 bp
Sequences
Splice sites
3' ss Seq
GATGTGTTTGTGTCCCGAAGGCC
3' ss Score
6.88
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
GATATGATGCCTCTACAGAATATCTACACACAGGCGCTGGAGCATGATCTCAAGACCAGCGCATCAGCCAAACAAAGCGCTGAAAACATACAACAGCGCTGCTACCAG
Seq A exon
GCCCTGTCAGCCAAGAGGAACGAGATCGACAAGTGGAGGAGGGAATTCAAAGAGCAGTGGTCAAAGGAGCAGAAGAGGATG
Seq C2 exon
CATGATGCGGTGTCAGCGCTGAAGAGAGCCCGGCAGCAGTATATGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACTGCCAAAGCTGAAGAGGACACTGGCGGTTATAAGACGCTGGACAAGAGGAGGAAGTCCAGAGATGATGCACAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077249-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.111 C2=0.648
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(32.2=80.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAAACAAAGCGCTGAAA
R:
GTCCAGCGTCTTATAACCGCC
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]