GgaEX1026763 @ galGal4
Exon Skipping
Gene
ENSGALG00000026345 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
JH376279.1:79206-80102:+
Coord C1 exon
JH376279.1:79206-79316
Coord A exon
JH376279.1:79600-79680
Coord C2 exon
JH376279.1:79914-80102
Length
81 bp
Sequences
Splice sites
3' ss Seq
TAACCATGAGCCCTCTGCAGCCT
3' ss Score
-0.19
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TCCAATATGCCTCTTCGGATGCTCTACGTGATGGTCTTGGAGAACGATATCAAGATTGGAAATGCAGCCAGTGAGACAGTGGGGTTGCTTCAACAGAAGGAATTCTACCAG
Seq A exon
CCTCTGTCGGCCAAGAAGAACGAGATCGAGAAGTGGAGGAAAGAGTTCAAAGATCAGTGGACAAAGGAGCAGAAGAGAATG
Seq C2 exon
AACGAATCCCTGTCCTTGCTGCGCAAAGCCCGCCTACAGTACATCCAGCGCTGCGAGGAGATGGAGAAAGCCAAGCAGCTGAGTGCAAAGGCAGAGGATGAGTACCAGAACTCGGCCATCATCAGCCCCAGCAGTGCCATCAAGCATCTGGAGAAGCGACGGCGCTCCTGTGAGGAGGCACAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026345_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATGCTCTACGTGATGGT
R:
GCTGCTTGGCTTTCTCCATCT
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]