DreEX6018963 @ danRer10
Exon Skipping
Gene
ENSDARG00000077249 | gmip
Description
GEM interacting protein [Source:ZFIN;Acc:ZDB-GENE-130530-823]
Coordinates
chr3:52482902-52498846:+
Coord C1 exon
chr3:52482902-52483153
Coord A exon
chr3:52494386-52494476
Coord C2 exon
chr3:52498753-52498846
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTCATTTTCTTCTGTTTCAGATG
3' ss Score
11.83
5' ss Seq
CTCGTACGT
5' ss Score
7.59
Exon sequences
Seq C1 exon
GGTGAAAGAGCATTGGCCAACCCAGCCTCCGCTTTAGAGGAAGAGAAGTGCTGCATGCGAGAGAACTGAAGAGAAGGGCACACGGTCTCCATGTCCTCTCTTAATGTCTGATGAAAGGTGATGCTTCTGCCCGGATCTTTTTGGGCTGGGGTGGACGGACAGAGTACTGGATGACCACACAGCCTGCTGTGAGAGGCTAAGAGGACCAGATGGAGGAGACTGTGGAGACTGCACAGCTGAGGCAGCCCAAAG
Seq A exon
ATGGGGATATTCCAGTCCGGCACTCGGAAACCAAGCGTTACAGTGAGATATTACGCGATTTTGATGCTTTGGATCTGTCCCTAAAATGCTC
Seq C2 exon
GACTGTGGATGAGCTCCTGCAAGAAGCAGATTCACTGTCTTTACCAGACACTTCAGCAGACACCACGCTGAACGCTGATCTGGACGATATTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077249-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.290 C2=0.469
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTTTTGGGCTGGGGTGG
R:
GGTGTCTGCTGAAGTGTCTGG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]