RnoEX0038913 @ rn6
Exon Skipping
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21360961-21362955:-
Coord C1 exon
chr16:21362828-21362955
Coord A exon
chr16:21361807-21361891
Coord C2 exon
chr16:21360961-21361048
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTATACTTCCCTCCCCCAGAGC
3' ss Score
9.9
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
ACCACTAGGCCGGCAAAGGCAGGAAATCGGGGCTGGTCCCGGGCGGCTGCCCTGTCCCTATCTCGGCTCTGCGCGTTCCCCACCCCACCCCCTGCCCCGGGGCCTCGCCATGGACTCAACGGAGACAG
Seq A exon
AGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGAGCCTGGACAACCTCGAGATATCATTGGGGAACGT
Seq C2 exon
GACTTTCGATCCCCTGGCTGGAGACCTTGTACTCAGAGAAGACCTGGAGCCTGACAAGACTGACACAGCTGCAGTGGAGACTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.414 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGCAGGAAATCGGGGC
R:
TGTCAGTCTTGTCAGGCTCCA
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]