BtaEX6036634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3613638-3615360:+
Coord C1 exon
chr7:3613638-3613690
Coord A exon
chr7:3614702-3614786
Coord C2 exon
chr7:3615285-3615360
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTGATACTCCCCTCTCCAAGGGT
3' ss Score
5.46
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
CCCCGTCCTAGCCGAGCGACCCTAGGGCCGGAGCATGGACTCAACAGAGCCGG
Seq A exon
GGTTACCCCCGCCTCCTGAGAGCAGGAAGAGGTACAGTGACATCTTCCGAAGCCTGGACAACCTCGAGATCTCACTGGGGAATGT
Seq C2 exon
GACTCTTGAGATGCTGGCTGGAGACCCTGTGATTTCAGGAGATCCAGAACCTGACAAGAACCCCACAGCCGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144-'0-3,'0-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.448 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCCTAGCCGAGCGAC
R:
CAAAGCGGCTGTGGGGTTC
Band lengths:
127-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]