HsaEX0027783 @ hg19
Exon Skipping
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:24852]
Coordinates
chr19:19752785-19754476:-
Coord C1 exon
chr19:19754320-19754476
Coord A exon
chr19:19753344-19753428
Coord C2 exon
chr19:19752785-19752860
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTACACTCCCCTCCCCTAGGAC
3' ss Score
10.56
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
CGTGGCCTCCGCTGGGCAGGGCGACGCGGAACCGAGGCGGCGGCGGCGGCTGCGGCGGCAGGAAATCGGGGCTCGGCCCCGCCGGCGCGCGACCCCATCCCCATCCCGGTCCCTGCAGAGCGATCCCCGGGCCCAGATATGGACGCAGCAGAGCCGG
Seq A exon
GACTCCCCCCAGGTCCTGAGGGCAGGAAGAGGTACAGTGACATCTTCCGGAGCCTGGACAACCTCGAAATCTCACTGGGGAACGT
Seq C2 exon
GACCCTTGAGATGCTGGCTGGAGACCCTCTACTCTCAGAAGACCCAGAACCTGACAAGACCCCTACAGCCACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.414 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAATCGGGGCTCG
R:
AACAGTGGCTGTAGGGGTCTT
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)