MmuEX0021276 @ mm10
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69808679-69810717:+
Coord C1 exon
chr8:69808679-69808820
Coord A exon
chr8:69809774-69809858
Coord C2 exon
chr8:69810630-69810717
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTACACTTCCCTCCCCCAGAGC
3' ss Score
10.15
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GGGGCGACACCACTGGGTCGGCAGAGGCAGGAAATCGGGCTGGTCCCGGGCGGCGCGCAGCCCTGTCCCTTTCTCAGCATTGCCGCGCGTTCCCCACCCCACCCCCTGCCCCCGGGCATCGCCATGGACTCAGCGGAGACAG
Seq A exon
AGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGAGCCTGGACAACCTCGAGATATCATTGGGGAACGT
Seq C2 exon
AACTTTTGATCCCCTGGCTGGAGACCCTGTACGCAGAGAAGACCTGGAGCCTGACAAAGCTGACACAGCCACAGTGGTGACTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-'0-3,'0-0,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.414 C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGCAGAGGCAGGAAATC
R:
GTCAGGCTCCAGGTCTTCTCT
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types