GgaEX0026577 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:28129298-28137532:+
Coord C1 exon
chrUn_random:28129298-28129398
Coord A exon
chrUn_random:28137228-28137321
Coord C2 exon
chrUn_random:28137457-28137532
Length
94 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCCCCATTCCCAGGTC
3' ss Score
9.07
5' ss Seq
TGCGTACGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
AGACCTCCTGCACTCCATCTTCTCCTTCCTGAACACCTATCCCGCTGTGACCGGGGACGCCATCCACTTGGCCATAGCCACACTCATTGCCAACATCAACG
Seq A exon
GTCTCGACCATCAAGAAAGGGCACCTGAAAACAAGAAGCGCTACAGTGAGATATTCCGCAGCCTGGATGCCATAGAAATCTCAATTGGAAATGC
Seq C2 exon
GGCAGTGGATATGTTCATTGGGGACGCCGATGGCACTGGAGATGCAGAGCTGTCCACGGAAAGGGAGATCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022319-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.438 C2=0.692
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCTGCACTCCATCTTCT
R:
TGATCTCCCTTTCCGTGGACA
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]