DreEX6018991 @ danRer10
Exon Skipping
Gene
ENSDARG00000052150 | pbx4
Description
pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
Coordinates
chr3:52793191-52798489:+
Coord C1 exon
chr3:52793191-52793435
Coord A exon
chr3:52798071-52798261
Coord C2 exon
chr3:52798354-52798489
Length
191 bp
Sequences
Splice sites
3' ss Seq
TCAAATCTGTTTGCCACCAGGCC
3' ss Score
7.93
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGCTGAGCATCAGAGGCGTGCAGGAGGAGGATCCTCCAGATCCACAGATCATGCGTTTGGATAACATGCTGCTGGCTGAGGGCGTCTCTGGGCCAGAGAAGGGTGGAGGATCTGCGGCGGCAGCAGCAGCTGCAGCGGCAGCTGGAGGATCACCTAATGATGGCAGCATCGAACACTCCGACTACAGAGCCAAACTCGCACAGATCCGCCAGATCTACCACTCCGAGCTGGAGAAATACGAACAG
Seq A exon
GCCTGCAGTGAGTTCACCAATCACGTGATGAACCTGCTGAGGGAACAGTCCCGCACACGGCCCATCTCACCCAAAGAGATCGAGCGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGCGCTCCCGTTTCCTCGACGCCAG
Seq C2 exon
ACGTAAGAGACGCAACTTCAATAAGCAGGCCACAGAGGTGCTGAACGAGTACTTCTACTCTCACCTCTCCAACCCGTACCCCAGTGAGGAAGCCAAGGAAGAGCTGGCCAAGAAGTGTGGGATCACTGTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052150-'6-11,'6-9,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.135 C2=0.014
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(40.9=100),PF070286=DUF1319=PU(34.6=34.1),PF040917=Sec15=PU(32.1=31.7)
A:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(63.0=79.7),PF040917=Sec15=PD(65.4=82.8),PF0004624=Homeobox=PU(0.1=0.0)
C2:
PF070346=ORC3_N=FE(48.9=100),PF0004624=Homeobox=PU(75.0=97.8),PF035088=Connexin43=WD(100=19.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGGTGGAGGATCTGC
R:
GCTCTTCCTTGGCTTCCTCAC
Band lengths:
255-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]