BtaEX0026046 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009975 | PBX4
Description
pre-B-cell leukemia homeobox 4 [Source:HGNC Symbol;Acc:HGNC:13403]
Coordinates
chr7:3678159-3682850:+
Coord C1 exon
chr7:3678159-3678403
Coord A exon
chr7:3678656-3678846
Coord C2 exon
chr7:3682694-3682850
Length
191 bp
Sequences
Splice sites
3' ss Seq
GGCATGTGTCCCCACCCCAGGCC
3' ss Score
6.52
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGTCGAGCATCCATGGCATTCAGGAAGTGGGCCCCCCTGATGCTCAGCTCCTGAGGCTGGATAACATGCTGCTGGCCGAGGGCGTGTCCAGGCCTGAGAAGCAAGGGAGGGGAGCATCGGCAGCAGCCAACGCAGCAATGCCAGGTGGCCGTCCAAACGACAGTGGCCTTGAGCACTCTGACTACAGGGCCAAGCTGTCCCAGATCCGACAGATGTACCACTCCGAGCTAGAGAAATATGAACAG
Seq A exon
GCCTGCCGTGAGTTCACCATGCACGTCACCAACCTTCTCCAGGAGCAGAGCAGGATCAGGCCCGTCTCGCCCGCGGAGATAGAGCACATGGTGGGGGTCATCCACGGCAAGTTCCAGAGCATCCAGATGCAGCTGAAGCAGAGCACCTGTGAGGCTGTGATGGCCCTGCGCGCGAGGTTCCTCGACGCCAG
Seq C2 exon
GTCTCCAACTGGTTCGGCAACAAAAGAATTCGGTATAAAAAGAACATGAGGAAGTTTCAAGAAGAGGCTACCATCTACACAGCCAAGACGGCAGTGGACGCCACCGAAGTCAGGGGCTCAGGGCGCCAGGCCAGCCCCCCATCGATGTCCCACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009975_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=0.031 C2=0.453
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(41.5=100),PF070286=DUF1319=PU(34.9=36.6)
A:
PF037928=PBC=PD(31.3=95.3),PF070286=DUF1319=PD(62.8=84.4),PF0004624=Homeobox=PU(0.1=0.0)
C2:
PF0004624=Homeobox=PD(21.7=24.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGCATTCAGGAAGTGGG
R:
TTGTTGCCGAACCAGTTGGAG
Band lengths:
258-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development