BtaEX0026047 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009975 | PBX4
Description
pre-B-cell leukemia homeobox 4 [Source:HGNC Symbol;Acc:HGNC:13403]
Coordinates
chr7:3678656-3682850:+
Coord C1 exon
chr7:3678656-3678846
Coord A exon
chr7:3679090-3679225
Coord C2 exon
chr7:3682694-3682850
Length
136 bp
Sequences
Splice sites
3' ss Seq
GAGGCTGTCTGTCTTCTCAGGCG
3' ss Score
7.02
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCCTGCCGTGAGTTCACCATGCACGTCACCAACCTTCTCCAGGAGCAGAGCAGGATCAGGCCCGTCTCGCCCGCGGAGATAGAGCACATGGTGGGGGTCATCCACGGCAAGTTCCAGAGCATCCAGATGCAGCTGAAGCAGAGCACCTGTGAGGCTGTGATGGCCCTGCGCGCGAGGTTCCTCGACGCCAG
Seq A exon
GCGTAAGCGGCAGAATTTCAGCAAGCAAGCCACAGAAGTGCTGAATGAATACTTTTATTCCCATTTGAGCAACCCATACCCCAGTGAAGAAGCCAAAGAGGAGCTGGCCAGGAGGGGTGGCATCACGGTCTCCCAG
Seq C2 exon
GTCTCCAACTGGTTCGGCAACAAAAGAATTCGGTATAAAAAGAACATGAGGAAGTTTCAAGAAGAGGCTACCATCTACACAGCCAAGACGGCAGTGGACGCCACCGAAGTCAGGGGCTCAGGGCGCCAGGCCAGCCCCCCATCGATGTCCCACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009975_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.196 C2=0.453
Domain overlap (PFAM):
C1:
PF037928=PBC=PD(31.3=95.3),PF070286=DUF1319=PD(62.8=84.4),PF0004624=Homeobox=PU(0.1=0.0)
A:
PF0004624=Homeobox=PU(75.0=97.8)
C2:
PF0004624=Homeobox=PD(21.7=24.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACGTCACCAACCTTCTC
R:
TGGCTGTGTAGATGGTAGCCT
Band lengths:
258-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development