GgaEX6047766 @ galGal3
Exon Skipping
Gene
ENSGALG00000013419 | PBX4
Description
NA
Coordinates
chrUn_random:30305639-30307041:-
Coord C1 exon
chrUn_random:30306851-30307041
Coord A exon
chrUn_random:30306442-30306577
Coord C2 exon
chrUn_random:30305639-30305795
Length
136 bp
Sequences
Splice sites
3' ss Seq
TAATGGTGTTTTTTTCACAGGCG
3' ss Score
8.04
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCCTGCAGCGAGTTCACCACCCACGTCATGAACCTGCTCAGGGAACAGAGCCGGACGAGGCCCATTTCTCCCAAAGAAATCGAGCGGATGGTGAACATCATCCACGGCAAATTCAGCACCATTCAGATGCAGCTGAAGCAGAGCACGTGCGAGGCGGTGATGATCCTCCGCTCACGCTTCCTCGATGCAAG
Seq A exon
GCGTAAACGGCGTAACTTCAGCAAGCAGGCAACAGAAGTGCTGAATGAGTATTTCTATTCGCACCTGAGCAACCCTTACCCCAGCGAAGAGGCCAAAGAGGAGCTCGCAAAGAAGGGTGGCATCACCGTTTCGCAG
Seq C2 exon
GTTTCCAACTGGTTCGGTAACAAAAGAATTCGGTACAAGAAGAACATGGGGAAGTTCCAAGAAGAAGCCAACATTTACGCTGCGAAAACAGCGGTGGATGCGACCAACGTTGTGGCTCAGGGCAACCGGGCAAACTCCCCATCAACACCAAATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013419-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.196 C2=0.321
Domain overlap (PFAM):
C1:
PF037928=PBC=PD(31.3=95.3),PF070286=DUF1319=PD(54.3=79.7),PF040917=Sec15=PD(53.8=54.7),PF0004624=Homeobox=PU(0.1=0.0)
A:
PF0004624=Homeobox=PU(75.0=97.8)
C2:
PF0004624=Homeobox=PD(21.7=24.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGAACATCATCCACGGC
R:
TGGTGTTGATGGGGAGTTTGC
Band lengths:
254-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]