DreEX6018990 @ danRer10
Exon Skipping
Gene
ENSDARG00000052150 | pbx4
Description
pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
Coordinates
chr3:52798071-52807252:+
Coord C1 exon
chr3:52798071-52798261
Coord A exon
chr3:52798354-52798489
Coord C2 exon
chr3:52807096-52807252
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTGCTGTGTCTGCAGACG
3' ss Score
9.78
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCTGCAGTGAGTTCACCAATCACGTGATGAACCTGCTGAGGGAACAGTCCCGCACACGGCCCATCTCACCCAAAGAGATCGAGCGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGCGCTCCCGTTTCCTCGACGCCAG
Seq A exon
ACGTAAGAGACGCAACTTCAATAAGCAGGCCACAGAGGTGCTGAACGAGTACTTCTACTCTCACCTCTCCAACCCGTACCCCAGTGAGGAAGCCAAGGAAGAGCTGGCCAAGAAGTGTGGGATCACTGTCTCTCAG
Seq C2 exon
GTCTCGAATTGGTTTGGCAACAAGAGAATTCGGTACAAGAAGAACATTGGTAAGTTCCAGGAGGAAGCAAACCTGTACGCCGTTAAAACAGCCGTGGACGCCGCCAATGTGTCGGCACAGGCCAGCCAGGCAAACTCTCCAGCAACACCCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052150-'7-13,'7-11,8-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.014 C2=0.269
Domain overlap (PFAM):
C1:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(63.0=79.7),PF040917=Sec15=PD(65.4=82.8),PF0004624=Homeobox=PU(0.1=0.0)
A:
PF070346=ORC3_N=FE(48.9=100),PF0004624=Homeobox=PU(75.0=97.8),PF035088=Connexin43=WD(100=19.6)
C2:
PF070346=ORC3_N=FE(17.4=100),PF0004624=Homeobox=PD(23.3=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATCCACCGCAAGTTCA
R:
TGTTGCTGGAGAGTTTGCCTG
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]