GgaEX6047765 @ galGal3
Exon Skipping
Gene
ENSGALG00000013419 | PBX4
Description
NA
Coordinates
chrUn_random:30306442-30307651:-
Coord C1 exon
chrUn_random:30307410-30307651
Coord A exon
chrUn_random:30306851-30307041
Coord C2 exon
chrUn_random:30306442-30306577
Length
191 bp
Sequences
Splice sites
3' ss Seq
ACAAATATCTCCACTTTCAGGCC
3' ss Score
8.18
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TGTTAAGTATTCGTGGTATTCAGGAAGAAGACCCCCCCGATGCCCAACTAATGAGGCTAGATAACATGTTGCTGGCGGAGGGCGTCTCCGGCCCCGAGAAAAGAGGAAGAGGAGCACCGATGGCTGTAGCAGCAACACCAGGTGGCTGTCCAAATGACAATAGCATTGAGCACTCTGACTACAGGGCCAAGCTGTCACAGATCCGACAGATATACCACTCTGAGCTAGAGAAATATGAACAG
Seq A exon
GCCTGCAGCGAGTTCACCACCCACGTCATGAACCTGCTCAGGGAACAGAGCCGGACGAGGCCCATTTCTCCCAAAGAAATCGAGCGGATGGTGAACATCATCCACGGCAAATTCAGCACCATTCAGATGCAGCTGAAGCAGAGCACGTGCGAGGCGGTGATGATCCTCCGCTCACGCTTCCTCGATGCAAG
Seq C2 exon
GCGTAAACGGCGTAACTTCAGCAAGCAGGCAACAGAAGTGCTGAATGAGTATTTCTATTCGCACCTGAGCAACCCTTACCCCAGCGAAGAGGCCAAAGAGGAGCTCGCAAAGAAGGGTGGCATCACCGTTTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013419-'4-4,'4-3,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=0.219 C2=0.196
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(41.0=100),PF070286=DUF1319=PU(43.6=50.6),PF040917=Sec15=PU(43.1=34.6)
A:
PF037928=PBC=PD(31.3=95.3),PF070286=DUF1319=PD(54.3=79.7),PF040917=Sec15=PD(53.8=54.7),PF0004624=Homeobox=PU(0.1=0.0)
C2:
PF0004624=Homeobox=PU(75.0=97.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATGCCCAACTAATGAGG
R:
TTCTGTTGCCTGCTTGCTGAA
Band lengths:
244-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]