MmuEX0033855 @ mm10
Exon Skipping
Gene
ENSMUSG00000031860 | Pbx4
Description
pre B cell leukemia homeobox 4 [Source:MGI Symbol;Acc:MGI:1931321]
Coordinates
chr8:69864312-69866603:+
Coord C1 exon
chr8:69864312-69864550
Coord A exon
chr8:69864824-69865014
Coord C2 exon
chr8:69866468-69866603
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCCATCTTTTCCCACCCCAGGCC
3' ss Score
9.48
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
CCGTGAGCATCCAGTTTCAGGAAGAGGACCCTCCCGATGCCCAGCTGCTGAGGTTGGATAACATGCTGCTGGCTGAGGGTGTGTCCAGGCCAGAGAAGAGAGGCCGAGGAGCAGCAGCAGGCAGCACAGCAACACCAGGTGGCTGTCCAAATGACAATAGCATTGAGCACTCAGACTACAGGGCCAAGCTGTCCCAGATCCGACAGATTTACCACTCTGAGCTAGAGAAGTATGAACAG
Seq A exon
GCCTGTCGTGAGTTCACCACACATGTCACCAACCTTCTCCGGGAACAGAGTAGGGTGAGGCCTGTGTCTTGCAGGGAGATGGAACACATGGTGAACACCATCCAGAGCAAGTTCAGTGCCATCCAGAGGCAGCTGAAGCAGAGCACGTGTGAGGCTGTGATGACTCTACGCTCACGGTTCCTGGATGCCAG
Seq C2 exon
GCGCAAGCGGCGGAATTTCAGCAAGCAGGCCACAGACGTGCTGAATGAATATTTCTATTCCCATTTGAGCAACCCTTACCCCAGTGAAGAGACCAAAGAAGAGCTGGCCAGGAAGGGTGGCATCACAGTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031860_MULTIEX1-3/5=2-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.537 A=0.076 C2=0.383
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(40.3=100),PF070286=DUF1319=FE(45.4=100)
A:
PF037928=PBC=PD(3.5=28.6)
C2:
PF0004624=Homeobox=PU(75.0=97.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGGCCAGAGAAGAGAG
R:
CTTCACTGGGGTAAGGGTTGC
Band lengths:
247-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types