MmuALTA0012803-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031860 | Pbx4
Description
pre B cell leukemia homeobox 4 [Source:MGI Symbol;Acc:MGI:1931321]
Coordinates
chr8:69859080-69864977:+
Coord C1 exon
chr8:69859080-69859153
Coord A exon
chr8:69864824-69864897
Coord C2 exon
chr8:69864898-69864977
Length
74 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
CCCATCTTTTCCCACCCCAGGCC
3' ss Score
9.48
Exon sequences
Seq C1 exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCTGCGAGATCAAGGGGAAGACTG
Seq A exon
GCCTGTCGTGAGTTCACCACACATGTCACCAACCTTCTCCGGGAACAGAGTAGGGTGAGGCCTGTGTCTTGCAG
Seq C2 exon
GGAGATGGAACACATGGTGAACACCATCCAGAGCAAGTTCAGTGCCATCCAGAGGCAGCTGAAGCAGAGCACGTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031860-8-7,8-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.4=100)
A:
NA
C2:
PF037928=PBC=PD(3.5=28.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATGCCCTGAACTGCC
R:
CTCACACGTGCTCTGCTTCAG
Band lengths:
153-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types