MmuALTA1023423-2/7 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031860 | Pbx4
Description
pre B cell leukemia homeobox 4 [Source:MGI Symbol;Acc:MGI:1931321]
Coordinates
chr8:69859080-69866603:+
Coord C1 exon
chr8:69859080-69859153
Coord A exon
chr8:69866468-69866536
Coord C2 exon
chr8:69866537-69866603
Length
69 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
CTGGGCATCTCTGTCTGTAGGCG
3' ss Score
7.65
Exon sequences
Seq C1 exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCTGCGAGATCAAGGGGAAGACTG
Seq A exon
GCGCAAGCGGCGGAATTTCAGCAAGCAGGCCACAGACGTGCTGAATGAATATTTCTATTCCCATTTGAG
Seq C2 exon
CAACCCTTACCCCAGTGAAGAGACCAAAGAAGAGCTGGCCAGGAAGGGTGGCATCACAGTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031860-8-17,8-16,8-15,8-14,8-13,8-12,8-11-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.383
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.4=100)
A:
NA
C2:
PF0004624=Homeobox=PU(75.0=97.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATGCCCTGAACTGCC
R:
GACACTGTGATGCCACCCTTC
Band lengths:
137-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types