MmuINT0115828 @ mm10
Intron Retention
Gene
ENSMUSG00000031860 | Pbx4
Description
pre B cell leukemia homeobox 4 [Source:MGI Symbol;Acc:MGI:1931321]
Coordinates
chr8:69859080-69866603:+
Coord C1 exon
chr8:69859080-69859153
Coord A exon
chr8:69859154-69866467
Coord C2 exon
chr8:69866468-69866603
Length
7314 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
CTGGGCATCTCTGTCTGTAGGCG
3' ss Score
7.65
Exon sequences
Seq C1 exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCTGCGAGATCAAGGGGAAGACTG
Seq A exon
GTAGGCACCTCTAAGACTGTCTGCTCTGGCCTCATGTGGGCTGCACTTGTGGCCTCTTCACAGCTCTCTGACAGCACATGGTTCTGCCAGCTTTCAAAATTCAAAAAAATTGAATTTTATTCTAGCTCAAGAATTCAGGGTTATCCCCATGGAATTCTTCAGCCTCTGCACATATGGGGTGGGCAGCTGGCTGGATAGCTCAGTGGATAAAGGCACTTACCACCTGATGGATGGATGACCTGAGTTCCATCCCTAGGACCCACATGGTGGAATTGACTCTAGCAAGGTATCCTCTGACCTCCACACATGTTTCATGGCACATGCCCCATCTCACAAATAAAGAAGTATAGTAAAACAAGTTAAATGAAAAAGAGGGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTTTCTCAGGGAAAAAAAAAAAAAAAAACAACAACAACAACAAAAATGAAAAAGAGGTGTGGTTGGATCACTTTCCATGCATGCATGAGGCCAGAGTTCTGATTCCCAGCACCTGTGTAAATGGTAGCAATCCTAGTAAGATAGGATCCAGGGTCAAGCACGCTTTCTAGACTTGCCAAACCAGGTGGTTCTGGATTCAAGTGAGAGGCCTTAGCTCAATGTGTAAAGTGGAAGGGGCTGGAGAGACGATGGCTCAGCAGTTAAGAGCACTGGCTGCTCTTACAGAGGACCCAGCTTCAAGTTCCAGCAGCAGACTACTCTCACATGCACAGACATCCATACAGGCAAAACACCAGTCCAGTATGTGTGTGTGTGTTAATGATCAAGGAAAACATTGATGCCAACCATGGACCTACATACACTGTACACCTACACAAATACTACACACACATGTACATGCAAAGAATAGGCCAGGCCTCAGAGCACAGTCCTATCAACAGTCCAGGAAGCTGAGGCACAAAGATGCAAGTTCAATGTGACCCTGGCCTTCCTTATAAAACCTGTCTCAAAATTAATTAAAGTGCACACCTTTAATCTTACCACTCAAGAGGCAGAGACAGGAAGATCTCCGTGAGTTCAAGGTTAGCCTGGTCTACAGAACAAGTTCCAGGAGAGCCAGGGCTACACAGAAAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAGAAAGGAAAAAAGAAGGAAAGAAAAGAAAAGAGAAAAGACCATTAAATAAAGGCAAAGGCAGGCCCAGTGACTCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCTAGGCCAGCCTGGTCTTCAAAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAACCATGGACCTCCTGCCTCAATCCCCCAAGTGCTGTGATTAGAGGTCTGCACTTCTAAGCCTGAGAGAGGATATCAGCTCCTATCAGTTTATGGCTCCAGGCGCTTCCTTCGAGGGGGACTGCAGATTGCTGGTGCTCTTGCACCTGTCTGTTTCAAGGAGGGGAAAGGCTTCAAACATATCTGTTGTAGCTTATATAATTTTGTCATGACCGAGAGGCCCAATGGTTTTCTACTGTGTGCTTTTTGTTTTGTTTGAGACAGAGTCTTATCCCAGGCTTGTCTCAAGCTTATGTAGTTGAGGCTGGCCTTGAATTCTCAGTCCTCCTGCCTCTGCCTCCTAGTGTTCGGATGCCAGGAGTGCATCCCTGCAACAAGCTTATGCAAATCTGGCGGATGCAGGACTCAGGCCTTAGACAAGGGATCCACTGACTGCATCCCTGCCGTGCTCCTCTGTGTGCACAGACCACCTGTTGTGTATCACATGTTGTGTATCTGACAGATACATGGATATGCCCTTCTTAGCCACTGTAAACAGTGCTACCAATGCCAGGTGTGTGCAGACGTATGTCCAGGTCCCTCCGCTTCTTATTTTTGTCTTTTTCTTTTTGGCAGTGCCCAGAGGGACCTAGGGCCTCTTGAATGCTGTGCTGGGTTAGTTAGTTCTCTTGCTGCCATGATAAAAACCCCTGGCTAAAGCCACGTGAGGAGGAAAGGTTTGTTGTGGCCCTTGGTTTAGGGGACACAGTCTACCATGATGGAGGAGCTGGCTGGCAGGAGCCTTTCAGCACTGTAGAGGGCAGGTGAAGCAACTGCTTACACTTCCTCATTTCTACCGCCTCCCAAAACATCACTGCCAGCTGGAGATTTTGTGCCTAGACATAGAGCCTGGACTAGTGGGTTTAATACCTGGGACCCAAATGACCCAAATGGTGCACAGAAAGAACCAACTACACACACACACACACACACACACACACACACACACACACACACACACACAAAGAGAAGTAAGAAAACATTAAGAGGACTTTGTAAACTGGTGAGCTTGCAGGGCATGTTTGACATTGAGACCTCTCCCCCTGTGCTCATCCTCGCTCTACTGAGTGCAGTGAGGCCCTGCTTGGCTTGTATAGTGCCTGCCTGTCATCCTCAGGAGGTGGAGACAGAAGGATCAAGAGTTTAAACCTAGCCTGGGCTACATGAAACACTGCCTCACCACCACTCAAAATTAATAAAAGCTGGGTGTAGTGGTGCACATCTTTAATCCCAGCACCCAGGAGTCAGAGGGAGGGAGGTCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAATACCAGGACAGCCAGGGCTACACAGAGAAACTGTCACAAAGCAGGAGAGCAAAGGAGTGTCAGGTCTACTGCACCAGAGAAGGCCAAGGCTCATCTCAGAGAAACTTCTCCATGGTCTGACCTCTGATGCCCACAGGCAGTTGGCCAGGGCTCCCTCCAGTAATGGTTAGGACATGTCATAACAAAAGACAGAGGACACAGAGGGAGCTCCACTGAGAAACATATAAAACAGTGGAGCATGTCCACACTGAGAGGTGGACATTTGCCTGCATGCATGTTTGCATCTTATGCATGCCTGGTGCCCAAGGGTACCAGGAGACAGCACTGGATCCCCTAGGACTGGAATTGCCAATGGTTGTGAGCTGCATTGTGGGTGCTGGGAACTGAATCTGGGTCCTCTGCAAGAGCTGAACCATCTCTCCAGCCCTGTTACTGATTTTTTGTATGGAGATGGCACATGCTGTGCGGAGGTCAGAGGACAATGTGACAGGAGCCTTTGGGCTTGGCCACAGGCGCCTTTATTTACTTGCTGGACACCTCACCGACCTGGGAATGTTCTTTGAGGTTTTTAGAGTTTTGTTTTGTTTGTTCTGTTGTGATTTGGTTTTTCAAGGTGGGGTTTCTCTGTGTAGCCCCAATCTGTCCTGGAATTCATTCTGTAGACCAGGCTATCCTCAAACTCAGATATCCAACTGTCTCTGCCTACCAAGTGCTGGGATTAAAGGTGTGCACCACCACCACCTGGCCTAAAGGTTTTCTTTTTATAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAGTGTATGACATGTGTTTGTGTACAGGGTGTATATTTTATGTGTATTGTGGGTATGCATGTCCCTATATGTAGTGTATATGTATACATGTGTACATGCATGTGTAGGAGTATATATTGGAGGCCAGAGGTTGATATTAGATGTCTTCCTTGATTGGGCTTCCCTTATTTTTGTTTTGAGACAAGATCTCACTGTGTAGCCCAGGCTGGCCTAGAACTTACTTTATAGACCAGGCTGGCCCTGAAGTCAGACATTGACACTCAAGCTGACTTGGAATAAAGGCATGCACCACAGTCTTTTTTTTTTTTCTAAGACAGGGTTTCTCTGTATCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCTGGCTTATTTATTTATTTATTTATTTTTAAAAGATGGTTATATTTATTTATTTGTTGTGGGTTGTTTTAGATTTTATTTTTTATTTTCTGTATATTAGTATTTTATTAGTATTTGCCAGGATGTATGTGAGCACCATGTGTGTGCACTGTCAGAATTACAGACGGGAGCCAGCTCACTAGCAGCTGAATCAGGCATTTCCTTTTCTAATTTATACGAGTACTATCCCACCACATGCCACACACACACACACACACACACACATAGACTCATGGACACACGGACACACATGGATACAGATGCATGCATGCATACACATGCACAGAGAACATGGACACATGGGCATGTAGCAGAACCCATCAGTGCAATACTGTGCCTGGTCCCCATGATAAGCTATTGCCTTTACTATCTTTTCACCTTTATTTATCTTGTAGGAGGGAAGGGAGAGGCACATGTAGATAGAGGGTCAGCTGCAGGACTTGGCTCTCCTTCCGCCACACGGGCTTGGGGATTGGTTCTATGCCATCCGGCTTGGCAGCAAGCTCTCCCCACTGAGCTGTCTCACTAGCTCTGTGCCTGTCTCTGCATTTGCACCCACACCAGCATGGCCCCTCCCCAGCACTTAGGATGCTCTGCTCACTCAAGGCACCTACCCTGAAACCCACTCAGCCTGGCTGTGTTCCCATGTGGTTGTCAAGTTCTGCCCACACATGCTGCTGTGTCCCAGTGTCCTCTCCTCAGCCAGGACTGTGGGCTTGAATTGTTGTCCCAGTGGGTCACTAGGTGTCTCTGATCCAATGTGGAAATAAAGAAACTGGAGGATGGCTTAGAGGTCAAGAGTGTTTCCTGGTCTTGCAAAGGACTGAGTTCAGTCCCCAGCACCTACACTGGGCAGCATACAGTTGCCTGTGAACCCAGCTCTAGGGGTCAGCCATGGACTTCCTGGACTCCCAGGGCACCTGCAGTCACACATGCACATGCCCACACACAGATGCGCACATAATTGATATTTTTAAGTGATGCCCAGCCATGGTGCCAGTGCCACTTGGTCCTGGCTACTTTTCTCTTCAGAGAGCACATCCTGGTCTGCCTCTGTTCCCTCTAGCCGTGAGCATCCAGTTTCAGGAAGAGGACCCTCCCGATGCCCAGCTGCTGAGGTTGGATAACATGCTGCTGGCTGAGGGTGTGTCCAGGCCAGAGAAGAGAGGCCGAGGAGCAGCAGCAGGCAGCACAGCAACACCAGGTGGCTGTCCAAATGACAATAGCATTGAGCACTCAGACTACAGGGCCAAGCTGTCCCAGATCCGACAGATTTACCACTCTGAGCTAGAGAAGTATGAACAGGTGATCTTTCTACATGCAAGAGTTTGTCTTGTGAATGTGCACTGGCCACAGACAGATGTGGACATGAGCTCCCTGCTCTATGGCAGAGCAGGGACAGCCCGCCACAGTCAGTCACTGCAGAGGGGCTGGTGTCACTGAAAGCGCTTTCCCCTCACTCCTCAGAGCTGACCTGAGTGTGAGCTGTGGGGGTGGCAGATGTGGTCAGCTGTGGAGCCCACTGCCCCGCACCACTGGCTGCTGAGTCACAGGCTGGCCCATCTTTTCCCACCCCAGGCCTGTCGTGAGTTCACCACACATGTCACCAACCTTCTCCGGGAACAGAGTAGGGTGAGGCCTGTGTCTTGCAGGGAGATGGAACACATGGTGAACACCATCCAGAGCAAGTTCAGTGCCATCCAGAGGCAGCTGAAGCAGAGCACGTGTGAGGCTGTGATGACTCTACGCTCACGGTTCCTGGATGCCAGGTCAGGGGCTGCGTGCCACTGGGGTCCCCGAGGGTTGGCCCTTAGATAATAGAAGCAGGATCAGAGTAGGATAGTTCCGATGTTTATGTCATAGTGTTGCAAGCGCTAATCCCATGTTCTCCCTACCACTGAGCCCAGCCAAGCTCTGTCTTGTTTTTAAGTCTGTCCAGAGGGTCTAGCCAAGGCCTCACATAGCTTCTTTATGAGAAGACCCAAAGTACAAACTGCTGGTTTGTTGTGTGTGTGTGTGTGAATGGCAGGTGAGTGTGTCATGGCACAGCGCGTGGACAGCAGAGGACAGCCTCAGGGTCTCTGCTGTTTTCCACTGGATGTGTCAGGCCAGCTGCCCAGTTCAGAGGATTCTCCTGTCTGCCTCCTGTCGTGCCTGCCTGTGGAGCTCTGTGACTACAGACATGTGCTGACATTATGGCTCCACATGGGTCAGGGAACCCAGACTCGGGTCTTCTTACATGTTCCTTACCTACTGGGGCATCTGTAAAGCCCCTGATTGACCGGGATTGCTCACTCAGTTAAGTGTTCGCTGTGCAGTCAGAAGGACCTGAGTTTGCACACCCAGCACCCACATAAAAAGCCAGAAATAGGCCAGCAATATGGTGCAGGGGGTAAAGGAACTTGCTGCAAAAGTCTCAAAACCTGAATTTGATCCCAGAAATGACCTGAACCTGCAGGAATAAGGGTTCTAAATGTTGAAGTGTTAAGTAGGAGGGTCGAGAGGAGATAAGCAATAGCTGGGACCAGGAGACCTTGCATAAGTGACGACTTCTGCTAAGAGAGTTTGTTCAGAAGTACATCACCCTATATACTATTTTCAGAGGGGAAATGGCAAGGCTGGGAGAGAGCAAAGTCAAGCAAAGAGTACATAAGGTGCTCAGACAGAGCTGCTTAAGGACCGACAACCACAGCCTGGGGGCAGAGCCAGGTCCCCGGAAGCTGCAGTCTTGGCTTCTCTGAGGCTCTGGACAGGCACACAGAGCTAGTGTTCTCTTTGTCCTCTCATCTGGGTCTCTGGTGTGTGCACACACACAGACATACACACACACACACACACACACAGACACACATAAACACACACATACACACACACACACTTCTACACACACAGACACTTACACACAGACACATACACACACATACACTCACACATGCACACACACACACACACACAAAGACTTTTTAAAGCCAGGAGCTGCTGCAACCCAGGCACTGGAAACATGGAGACGGGCTGGTCCCTAGGCCTGCTGATCACCTCTGCCCAGTGAGTGAGCTCCAGGTTCAGTGCGAGACCACACCTCAAAGAAAGAAGATGGAGAGTGATGGAGGACACAGGCACCCACCCACCTCTGGCCTGTACATGCACAGGAGATTAGGGACATGAGAGATGTGACTCTACCCCAGCAGGGAAGCACTGCAGACTGGGCATCTCTGTCTGTAG
Seq C2 exon
GCGCAAGCGGCGGAATTTCAGCAAGCAGGCCACAGACGTGCTGAATGAATATTTCTATTCCCATTTGAGCAACCCTTACCCCAGTGAAGAGACCAAAGAAGAGCTGGCCAGGAAGGGTGGCATCACAGTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031860:ENSMUST00000134777:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.383
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.4=100)
A:
NA
C2:
PF0004624=Homeobox=PU(75.0=97.8)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types