DreEX6019944 @ danRer10
Exon Skipping
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3535779-3537773:+
Coord C1 exon
chr6:3535779-3535886
Coord A exon
chr6:3535987-3536031
Coord C2 exon
chr6:3537686-3537773
Length
45 bp
Sequences
Splice sites
3' ss Seq
GATTCTGTTTGCTTTCATAGGGA
3' ss Score
8.71
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGAAAAAGGAGTTGGCAAGACTACTCAGAAACCATTGCATTACAAAGGAACTCCTTTCCACAGGATAGTGAAGGATTTCATGATACAAGGAGGAGATTTCAGTGAAG
Seq A exon
GGAATGGCAGAGGTGGTGAATCTATATATGGAGGTTTCTTTGAAG
Seq C2 exon
ATGAAAGTTTCTCAATGAAACATACCAAGGAGTTCCTGCTATCGATGGCCAACAGAGGGAAAGACACCAACGGCTCACAGTTCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.295
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
PF0016016=Pro_isomerase=FE(15.2=100)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAGACTACTCAGAAACCA
R:
TGGCCATCGATAGCAGGAACT
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]