HsaEX6016600 @ hg19
Exon Skipping
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650]
Coordinates
chr2:170462549-170465268:+
Coord C1 exon
chr2:170462549-170462656
Coord A exon
chr2:170463614-170463658
Coord C2 exon
chr2:170465181-170465268
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGTATGTTTTTCATTTTTAGGAA
3' ss Score
10.13
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGAAAAGGGGACCGGGAAATCAACTCAGAAACCATTACATTATAAGAGTTGTCTCTTTCACAGAGTTGTCAAGGATTTTATGGTTCAAGGTGGTGACTTCAGTGAAG
Seq A exon
GAAATGGACGAGGAGGGGAATCTATCTATGGAGGATTTTTTGAAG
Seq C2 exon
ACGAGAGTTTCGCTGTTAAACACAACAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGTTCACAGTTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.009 C2=0.226
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(25.0=85.7)
A:
PF0016016=Pro_isomerase=FE(9.0=100),PF062177=GAGA_bind=PU(7.7=87.5)
C2:
PF0016016=Pro_isomerase=FE(17.5=100),PF062177=GAGA_bind=FE(15.9=100),PF094685=RNase_H2-Ydr279=PU(16.0=83.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCGGGAAATCAACTCAG
R:
TTCTTTGTTGTGTTTAACAGCGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)