GgaEX1002370 @ galGal3
Exon Skipping
Gene
ENSGALG00000009839 | PPIG
Description
NA
Coordinates
chr7:20091559-20093613:-
Coord C1 exon
chr7:20093506-20093613
Coord A exon
chr7:20092966-20093010
Coord C2 exon
chr7:20091559-20091646
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCACATTTCTTCTTTCAAGGAA
3' ss Score
8.89
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAAAAGGGTACAGGAAAATCCACCCAAAAGCCATTGCATTACAAAAGTTGTCTGTTTCACAGGGTAGTGAAAGATTTTATGATCCAAGGCGGTGACTTCAGTGAAG
Seq A exon
GAAATGGCAGGGGAGGAGAATCCATTTATGGTGGCTTTTTTGAAG
Seq C2 exon
ATGAAAGCTTTGCTGTAAAGCACAACAAAGAATTTCTTCTTTCAATGGCCAACCGAGGGAAGGATACAAATGGTTCACAGTTCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
PF0016016=Pro_isomerase=FE(9.0=100)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCAAAAGCCATTGCAT
R:
CCTCGGTTGGCCATTGAAAGA
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]