MmuEX0036567 @ mm9
Exon Skipping
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69570875-69572435:+
Coord C1 exon
chr2:69570875-69570982
Coord A exon
chr2:69571246-69571290
Coord C2 exon
chr2:69572348-69572435
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGAGTGTTTTTCATAACTAGGGA
3' ss Score
6.15
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGAAAAAGGGACAGGGAAATCAACTCAGAAGCCATTACATTATAAGAGCTGTCTCTTTCATAGAGTTGTCAAGGATTTCATGGTTCAGGGTGGTGACTTCAGTGAAG
Seq A exon
GGAATGGAAGAGGAGGAGAATCTATTTATGGAGGATTCTTTGAAG
Seq C2 exon
ATGAGAGTTTTGCTGTTAAACACAACAAAGAGTTTCTCTTATCAATGGCCAACAGAGGGAAGGATACAAATGGCTCTCAGTTCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-'9-17,'9-16,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
PF0016016=Pro_isomerase=FE(12.8=100)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATTACATTATAAGAGCTGTCT
R:
ATCCTTCCCTCTGTTGGCCAT
Band lengths:
143-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: