HsaEX6016600 @ hg38
Exon Skipping
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169606039-169608758:+
Coord C1 exon
chr2:169606039-169606146
Coord A exon
chr2:169607104-169607148
Coord C2 exon
chr2:169608671-169608758
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGTATGTTTTTCATTTTTAGGAA
3' ss Score
10.13
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGAAAAGGGGACCGGGAAATCAACTCAGAAACCATTACATTATAAGAGTTGTCTCTTTCACAGAGTTGTCAAGGATTTTATGGTTCAAGGTGGTGACTTCAGTGAAG
Seq A exon
GAAATGGACGAGGAGGGGAATCTATCTATGGAGGATTTTTTGAAG
Seq C2 exon
ACGAGAGTTTCGCTGTTAAACACAACAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGTTCACAGTTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-'18-18,'18-15,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.006 C2=0.192
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(25.0=85.7)
A:
PF0016016=Pro_isomerase=FE(17.3=100)
C2:
PF0016016=Pro_isomerase=FE(17.5=100),PF095075=CDC27=PU(8.5=60.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCGGGAAATCAACTCAG
R:
TTCTTTGTTGTGTTTAACAGCGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains