DreEX6020725 @ danRer10
Exon Skipping
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10530782-10531480:-
Coord C1 exon
chr6:10531397-10531480
Coord A exon
chr6:10530991-10531111
Coord C2 exon
chr6:10530782-10530866
Length
121 bp
Sequences
Splice sites
3' ss Seq
TATTTTTATCTGTTCTGCAGCTC
3' ss Score
8.73
5' ss Seq
CCGGTAACA
5' ss Score
5.92
Exon sequences
Seq C1 exon
GTTTGGACCCTTGCTGTCATGCTACTTAGTAAGAAGTTTCGGAGGATGCCACATATGTTTGCCACAAATCTGTTTTTAGCACAG
Seq A exon
CTCCTAGCTTGTATGTCGATGCTCTTTTGGAAGTTTGTCCTAAAGCAGGGCAGCGTATTTGGCCAAATTCTCACCTTTACACTACTTTATGGATCTCTCTACAGCACCTACGTGTGGACCG
Seq C2 exon
GTCTTTTGGCGTTCTCACTTACTTTACTGGGCAGAAATGAAAACTTGAAAGTGAAACCCATTGTGTTCATCATCTTTGGATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086-'7-10,'7-7,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGACCCTTGCTGTCATGC
R:
TCCAAAGATGATGAACACAATGGGT
Band lengths:
163-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]