DreEX6020737 @ danRer10
Exon Skipping
Gene
ENSDARG00000006639 | lnpb
Description
limb and neural patterns b [Source:ZFIN;Acc:ZDB-GENE-030131-9455]
Coordinates
chr6:10613748-10620282:-
Coord C1 exon
chr6:10620231-10620282
Coord A exon
chr6:10618402-10618614
Coord C2 exon
chr6:10613748-10613853
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTCATTATCTTCAGAGC
3' ss Score
9.7
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GAAGCAGAAGCCACTCCAGTCAGACCCCACATGACCCCTAGACCAGGACAAG
Seq A exon
AGCTACGGCAGAGGCATATTGCCATGGCTACTCCAGGCCCAGTACTCGGCCCTATGTCTCCGGGAACCACACCTCTCCGTACCGCCCCAGGAGGACCTCCAGAGAAAGGGTTAGCTGGGTCTGCATCCACCCCTGCTGGAGCCAGTCAAGCAGAAACACCACAACAAATGATGAGAAGAAGCATGAATCCATATTCTCCAGGACCTGGATCAG
Seq C2 exon
GTATGCGTCCCCCTGGCCCACCTCTCGCTCGACCCATCCTTCCACGAGAGCGTGGCGCTGTGGACAGAGTCATTGAGTATCTGGTGGGAGATGGACCTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006639-'14-11,'14-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF100584=DUF2296=PU(31.4=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGAAGCCACTCCAGTC
R:
GTTTTGAGGTCCATCTCCCACC
Band lengths:
156-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]