RnoEX0050295 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61443988-61464080:-
Coord C1 exon
chr3:61464029-61464080
Coord A exon
chr3:61449370-61449567
Coord C2 exon
chr3:61443988-61444093
Length
198 bp
Sequences
Splice sites
3' ss Seq
AATATGTTTATTATTCTCAGAGA
3' ss Score
5.21
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
GAGTTTGAGCCGCCATCTGCTGGAGCAGCTGCAACTGCAAAGCCAGGACAAG
Seq A exon
AGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCCCCAGCACCAGCAAACTCTAATCAGGGTCCTCCTCCACAAGTTCCAGTATCTCCTGGGCCATCAAAGGACGCTTCAGCTCCTGGGGGACCGCCAGAAAGGACTGTTGCTCCAGCCTTACCCAGGCGCCTTGGATCCCCTGCTACTTCAGTTCCTGGAATGG
Seq C2 exon
GCCTTCATCCTCCAGGCCCACCTTTAGCAAGACCCGTTCTCCCCCGAGAACGAGGTGCTCTGGATAGAATTGTTGAATATTTAGTTGGTGATGGCCCACAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'17-13,'17-12,20-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF100584=DUF2296=PU(31.4=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGAGCCGCCATCTGC
R:
TCTGTGGGCCATCACCAACTA
Band lengths:
154-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]