MmuEX6102219 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74531876-74547889:-
Coord C1 exon
chr2:74547838-74547889
Coord A exon
chr2:74537304-74537501
Coord C2 exon
chr2:74531876-74531981
Length
198 bp
Sequences
Splice sites
3' ss Seq
AATATGCTTATTATTCTCAGAGA
3' ss Score
4.28
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
GAGTTTGAGCCGCCATCTGCTGGAGCAGCTGTAACTGCAAAGCCAGGACAAG
Seq A exon
AGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCCCCAGCACCAGCAAGCTCTAGTCAGGGTCCTCCTCCACAAGGTCCAGTGTCTCCTGGGCCAGCGAAGGACGCTTCAGCTCCTGGGGGACCGCCAGAAAGAACTGTTGCTCCAGCCTTGCCCAGGCGCCTTGGATCCCCTGCTACTTCAGTTCCTGGAATGG
Seq C2 exon
GCCTTCACCCTCCAGGTCCACCTTTAGCAAGACCCATTCTCCCCCGAGAACGAGGTGCTCTGGATAGAATTGTTGAATACTTAGTTGGTGATGGTCCACAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-'26-29,'26-25,34-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=1.000 C2=0.553
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF100584=DUF2296=PU(31.4=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGAGCCGCCATCTGC
R:
CTGTTCTGTGGACCATCACCA
Band lengths:
158-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types