GgaEX6042251 @ galGal3
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17499909-17510462:+
Coord C1 exon
chr7:17499909-17499960
Coord A exon
chr7:17504426-17504650
Coord C2 exon
chr7:17510357-17510462
Length
225 bp
Sequences
Splice sites
3' ss Seq
GTATGTGCATATCTTGTCAGAAA
3' ss Score
4.4
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
GAGGCTGAACTGCCATCTGCTGGAACATCTGCAACCTCGAGACCTGGACAAG
Seq A exon
AAATTCGTCAGAGGACTGCAGCTCAAAGAAATGCTTCTACACCCACGCCTGCTACTCCTAAGCAAGGCTCTCCAAAATTGCTTGTTTCGTCAACACCGTCTCCCGATCTGCAGAGGGATGCATCTGCTCTTAGTGGACCACCAGAAAGAACCGCTGTGCCATCCTTGCAGTCAAATGTTCTACCGAGACGCCCTGGATCCCCTGCTACTTCAGTGCCTGGAATGG
Seq C2 exon
GTCTTCATCCTCCAGGCCCTCCTTTAGCGAGACCTATTCTTCCTCGAGAAAGAGGAGTTGTGGATAGAGTTATTGAGTATTTGGTTGGAGATGGTCCTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'13-18,'13-12,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.993 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF100584=DUF2296=PU(31.4=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACTGCCATCTGCTG
R:
TCTGAGGACCATCTCCAACCA
Band lengths:
151-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]