HsaEX0034242 @ hg19
Exon Skipping
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176804280-176829151:-
Coord C1 exon
chr2:176829100-176829151
Coord A exon
chr2:176812208-176812420
Coord C2 exon
chr2:176804280-176804385
Length
213 bp
Sequences
Splice sites
3' ss Seq
TATGTACTTACTCTTCTCAGAGA
3' ss Score
6.92
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
GAGTGTGAGCCGCCATCTGCTGGAGCAGCTGTAACTGCAAGACCTGGACAAG
Seq A exon
AGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCCCTGGTGGACCCCCAGAAAGGACTGTTACTCCAGCCCTATCATCAAATGTGTTACCAAGACATCTTGGATCCCCTGCTACTTCAGTGCCTGGAATGG
Seq C2 exon
GTCTTCATCCTCCAGGTCCACCTTTAGCAAGACCTATTCTCCCCCGAGAACGAGGTGCTTTGGATAGAATTGTTGAATATTTGGTTGGTGATGGTCCACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-'13-19,'13-14,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF100584=DUF2296=PU(31.4=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGAGCCGCCATCTG
R:
GTTTTGTGGACCATCACCAACC
Band lengths:
156-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)